Uses of Class
jebl.evolution.align.scores.NucleotideScores

Packages that use NucleotideScores

Package	Description
jebl.evolution.align.scores

Uses of NucleotideScores in jebl.evolution.align.scores

Subclasses of NucleotideScores in jebl.evolution.align.scores

Modifier and Type	Class and Description
class	Hamming
class	JukesCantor Jukes Cantor assumes equal substitution frequencies and equal nucleotide equilibrium frequencies.

Fields in jebl.evolution.align.scores declared as NucleotideScores

Modifier and Type	Field and Description
static NucleotideScores	NucleotideScores.CLUSTALW
static NucleotideScores	NucleotideScores.IUB
static NucleotideScores	ScoresFactory.NUCLEOTIDE_51_PERCENT_SIMILARITY
static NucleotideScores	ScoresFactory.NUCLEOTIDE_65_PERCENT_SIMILARITY
static NucleotideScores	ScoresFactory.NUCLEOTIDE_70_PERCENT_SIMILARITY
static NucleotideScores	ScoresFactory.NUCLEOTIDE_93_PERCENT_SIMILARITY

Methods in jebl.evolution.align.scores that return NucleotideScores

Modifier and Type	Method and Description
static NucleotideScores[]	ScoresFactory.getAvailableNucleotideScores()

Constructors in jebl.evolution.align.scores with parameters of type NucleotideScores

Constructor and Description
NucleotideScores(NucleotideScores scores)