| Package | Description |
|---|---|
| jebl.evolution.align |
Provides classes and interfaces for pairwise alignment of two sequences.
|
| jebl.evolution.align.scores |
| Class and Description |
|---|
| Scores
Base class for all score matrices in the package.
|
| Class and Description |
|---|
| AminoAcidScores |
| Blosum45 |
| Blosum50 |
| Blosum55 |
| Blosum60 |
| Blosum62 |
| Blosum65 |
| Blosum70 |
| Blosum75 |
| Blosum80 |
| Blosum85 |
| Blosum90 |
| NucleotideScores |
| Pam100 |
| Pam110 |
| Pam120 |
| Pam130 |
| Pam140 |
| Pam150 |
| Pam160 |
| Pam170 |
| Pam180 |
| Pam190 |
| Pam200 |
| Pam210 |
| Pam220 |
| Pam230 |
| Pam240 |
| Pam250 |
| ScoreMatrix |
| Scores
Base class for all score matrices in the package.
|
http://code.google.com/p/jebl2/