Uses of Interface
jebl.evolution.alignments.Patterns

Packages that use Patterns

Package	Description
jebl.evolution.alignments
jebl.evolution.parsimony

Uses of Patterns in jebl.evolution.alignments

Subinterfaces of Patterns in jebl.evolution.alignments

Modifier and Type	Interface and Description
interface	Alignment

Classes in jebl.evolution.alignments that implement Patterns

Modifier and Type	Class and Description
class	BasicAlignment A basic implementation of the Alignment interface.
class	BootstrappedAlignment Date: 15/01/2006 Time: 10:13:50
class	JackknifedAlignment Date: 17/01/2006 Time: 08:18:32
class	ResampledAlignment Date: 17/01/2006 Time: 08:08:44

Uses of Patterns in jebl.evolution.parsimony

Constructors in jebl.evolution.parsimony with parameters of type Patterns

Constructor and Description
FitchParsimony(Patterns patterns, boolean gapsAreStates)