Package jebl.evolution.coalescent

Interface Summary

Interface	Description
DemographicFunction	This interface provides methods that describe a demographic function.
IntervalList	An interface for a set of coalescent intevals.

Class Summary

Class	Description
CataclysmicDemographic	This class models an exponentially growing (or shrinking) population (Parameters: N0=present-day population size; r=growth rate).
Coalescent	A likelihood function for the coalescent.
ConstantPopulation	This class models coalescent intervals for a constant population (parameter: N0=present-day population size).
ConstExponential	This class models exponential growth from an initial population size.
ConstLogistic	This class models logistic growth from an initial population size.
DemographicFunction.Utils
EmpiricalDemographicFunction
Expansion	This class models exponential growth from an initial ancestral population size.
ExponentialGrowth	This class models an exponentially growing (or shrinking) population (Parameters: N0=present-day population size; r=growth rate).
ExponentialLogistic	This class models logistic growth from an initial exponential phase.
IntervalList.Utils
Intervals	A concrete class for a set of coalescent intevals.
LogisticGrowth	This class models logistic growth.

Enum Summary

Enum	Description
IntervalList.IntervalType