jebl.evolution.io

Class MEGAExporter

java.lang.Object

jebl.evolution.io.MEGAExporter

All Implemented Interfaces:

AlignmentExporter

public class MEGAExporter
extends java.lang.Object
implements AlignmentExporter

* Export to MEGA.

Version:

$Id: MEGAExporter.java 530 2006-11-15 04:01:44Z stevensh $

Author:

Joseph Heled

Constructor Summary

Constructors

Constructor and Description
MEGAExporter(java.io.Writer writer, java.lang.String comment)

Method Summary

Methods

Modifier and Type	Method and Description
void	exportAlignment(Alignment alignment) Deprecated. Files created by this export method won't be importable by MEGA (because they don't have titles). Use exportAlignment(jebl.evolution.alignments.Alignment, String) instead.
void	exportAlignment(Alignment alignment, java.lang.String name)

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

MEGAExporter

public MEGAExporter(java.io.Writer writer,
            java.lang.String comment)

Parameters:

writer - where export text goes

Method Detail

exportAlignment

public void exportAlignment(Alignment alignment,
                   java.lang.String name)
                     throws java.io.IOException

Parameters:

alignment - the alignment to export

name - the name of the alignment

Throws:

java.io.IOException

exportAlignment

public void exportAlignment(Alignment alignment)
                     throws java.io.IOException

Deprecated. Files created by this export method won't be importable by MEGA (because they don't have titles). Use exportAlignment(jebl.evolution.alignments.Alignment, String) instead.

Description copied from interface: AlignmentExporter

export one alignment.

Specified by:

exportAlignment in interface AlignmentExporter

Parameters:

alignment -

Throws:

java.io.IOException