jebl.evolution.io

Class PhylipSequentialImporter

java.lang.Object

jebl.evolution.io.PhylipSequentialImporter

All Implemented Interfaces:

SequenceImporter

public class PhylipSequentialImporter
extends java.lang.Object
implements SequenceImporter

Class for importing PHYLIP sequential file format

Version:

$Id: PhylipSequentialImporter.java 840 2007-11-09 04:52:39Z twobeers $

Author:

Andrew Rambaut, Alexei Drummond

Constructor Summary

Constructors

Constructor and Description
PhylipSequentialImporter(java.io.Reader reader, SequenceType sequenceType, int maxNameLength) Constructor

Method Summary

Methods

Modifier and Type	Method and Description
java.util.List<Sequence>	importSequences() importSequences.

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

PhylipSequentialImporter

public PhylipSequentialImporter(java.io.Reader reader,
                        SequenceType sequenceType,
                        int maxNameLength)

Constructor

Method Detail

importSequences

public java.util.List<Sequence> importSequences()
                                         throws java.io.IOException,
                                                ImportException

importSequences.

Specified by:

importSequences in interface SequenceImporter

Throws:

java.io.IOException

ImportException