Uses of Package
jebl.evolution.io

Packages that use jebl.evolution.io

Package	Description
jebl.evolution.align	Provides classes and interfaces for pairwise alignment of two sequences.
jebl.evolution.io
jebl.evolution.trees

Classes in jebl.evolution.io used by jebl.evolution.align

Class and Description
ImportException

Classes in jebl.evolution.io used by jebl.evolution.io

Class and Description
AlignmentExporter
AlignmentImporter
ByteBuilder Similar to a StringBuilder, but its internal buffer is a byte[] with one entry for each character, so it can only correctly append single-byte characters.
DistanceMatrixImporter
DistanceMatrixImporter.Triangle
IllegalCharacterPolicy What to do when an imported document contains illegal characters
ImmediateSequenceImporter A sequence importer sending the sequences back one by one, which makes it possible to import larger documents if handled wisely on the other side.
ImmediateSequenceImporter.Callback
ImportException
NexusImporter.NexusBlock Represents the block types used in the nexus format
SequenceExporter
SequenceImporter Interface for importers that do sequences
TreeExporter
TreeImporter Interface for importers that do trees

Classes in jebl.evolution.io used by jebl.evolution.trees

Class and Description
ImportException
NexusImporter Class for importing NEXUS file format.