jebl.evolution.sequences

Class AminoAcidState

java.lang.Object

jebl.evolution.sequences.State

jebl.evolution.sequences.AminoAcidState

All Implemented Interfaces:

java.lang.Comparable

public final class AminoAcidState
extends State

Version:

$Id: AminoAcidState.java 986 2009-03-10 01:00:03Z matt_kearse $

Author:

Andrew Rambaut, Alexei Drummond

Method Summary

Methods

Modifier and Type	Method and Description
int	compareTo(java.lang.Object o)
java.lang.String	getThreeLetterName()
boolean	isGap()
boolean	isStop()

Methods inherited from class jebl.evolution.sequences.State

fractionEqual, getCanonicalStates, getCode, getFullName, getIndex, getName, isAmbiguous, possiblyEqual, toString

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, wait, wait, wait

Method Detail

compareTo

public int compareTo(java.lang.Object o)

Specified by:

compareTo in interface java.lang.Comparable

Overrides:

compareTo in class State

getThreeLetterName

public java.lang.String getThreeLetterName()

Returns:

the 3 letter name for this amino acid. E.g "Ala" for "Alanine".

isGap

public boolean isGap()

Specified by:

isGap in class State

isStop

public boolean isStop()