jebl.evolution.sequences

Class TranslatedSequence

java.lang.Object

jebl.evolution.sequences.FilteredSequence

jebl.evolution.sequences.TranslatedSequence

All Implemented Interfaces:

java.lang.Comparable, Sequence, Attributable

public class TranslatedSequence
extends FilteredSequence

Author:

rambaut Date: Jul 27, 2005 Time: 12:48:31 AM

Nested Class Summary

Nested classes/interfaces inherited from interface jebl.util.Attributable

Attributable.Utils

Constructor Summary

Constructors

Constructor and Description
TranslatedSequence(Sequence source, GeneticCode geneticCode)

Method Summary

Methods

Modifier and Type	Method and Description
SequenceType	getSequenceType()

Methods inherited from class jebl.evolution.sequences.FilteredSequence

compareTo, getAttribute, getAttributeMap, getAttributeNames, getLength, getState, getStateIndices, getStates, getString, getTaxon, removeAttribute, setAttribute, toString

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

TranslatedSequence

public TranslatedSequence(Sequence source,
                  GeneticCode geneticCode)

Method Detail

getSequenceType

public SequenceType getSequenceType()

Specified by:

getSequenceType in interface Sequence

Overrides:

getSequenceType in class FilteredSequence

Returns:

the type of symbols that this sequence is made up of.