| Interface | Description |
|---|---|
| RateMatrix |
abstract base class for all rate matrices
|
| Class | Description |
|---|---|
| AbstractRateMatrix |
abstract base class for all rate matrices
|
| AminoAcidModel |
base class of rate matrices for amino acids
|
| MatrixExponential |
compute matrix exponential and, subsequently, transition probabilities
for a given rate matrix
|
| WAG |
WAG model of amino acid evolution (S.
|
http://code.google.com/p/jebl2/