jebl.evolution.treemetrics

Class BilleraMetric

java.lang.Object

jebl.evolution.treemetrics.BilleraMetric

All Implemented Interfaces:

RootedTreeMetric

public class BilleraMetric
extends java.lang.Object
implements RootedTreeMetric

Billera tree distance - sum of change in branch lengths required to transform one tree to the second Note that this interface is not optimal for a large set where all pairs are required. Creating TreeBiPartitionInfo's as a pre step is better unless memory is an issue.

Version:

$Id$

Author:

Joseph Heled

Constructor Summary

Constructors

Constructor and Description
BilleraMetric()

Method Summary

Methods

Modifier and Type	Method and Description
double	getMetric(RootedTree tree1, RootedTree tree2) calculates the metric between two rooted trees

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

BilleraMetric

public BilleraMetric()

Method Detail

getMetric

public double getMetric(RootedTree tree1,
               RootedTree tree2)

Description copied from interface: RootedTreeMetric

calculates the metric between two rooted trees

Specified by:

getMetric in interface RootedTreeMetric

Parameters:

tree1 - first tree

tree2 - second tree

Returns:

the tree metric value