jebl.evolution.trees

Class ClusteringTreeBuilder<T extends Tree>

java.lang.Object

jebl.evolution.trees.ClusteringTreeBuilder<T>

All Implemented Interfaces:

TreeBuilder<T>

Direct Known Subclasses:

NeighborJoiningTreeBuilder

public abstract class ClusteringTreeBuilder<T extends Tree>
extends java.lang.Object
implements TreeBuilder<T>

An abstract base class for clustering algorithms from pairwise distances

Version:

$Id: ClusteringTreeBuilder.java 662 2007-03-21 00:32:24Z twobeers $

Author:

Andrew Rambaut, Alexei Drummond, Joseph Heled Adapted from Alexei Drummond BEAST code.

Method Summary

Methods

Modifier and Type	Method and Description
void	addProgressListener(ProgressListener listener)
T	build()
void	fireSetProgress(double fractionCompleted)
static ClusteringTreeBuilder	getBuilder(TreeBuilderFactory.Method method, DistanceMatrix distances) A factory method to create a ClusteringTreeBuilder
void	removeProgressListener(ProgressListener listener)

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Method Detail

build

public T build()

Specified by:

build in interface TreeBuilder<T extends Tree>

addProgressListener

public void addProgressListener(ProgressListener listener)

Specified by:

addProgressListener in interface TreeBuilder<T extends Tree>

removeProgressListener

public void removeProgressListener(ProgressListener listener)

Specified by:

removeProgressListener in interface TreeBuilder<T extends Tree>

fireSetProgress

public void fireSetProgress(double fractionCompleted)

getBuilder

public static ClusteringTreeBuilder getBuilder(TreeBuilderFactory.Method method,
                               DistanceMatrix distances)

A factory method to create a ClusteringTreeBuilder

Parameters:

method - build method to use.

distances - Pre computed pairwise distances.

Returns:

A tree builder using method and distance matrix