jebl.evolution.trees

Class ConsensusTreeBuilder<T extends Tree>

java.lang.Object

jebl.evolution.trees.ConsensusTreeBuilder<T>

All Implemented Interfaces:

TreeBuilder<T>

public abstract class ConsensusTreeBuilder<T extends Tree>
extends java.lang.Object
implements TreeBuilder<T>

A TreeBuilder that builds a consensus tree for a set of trees on identical leaf sets. This abstract base class is designed to be extended.

Version:

$Id: ConsensusTreeBuilder.java 850 2007-12-06 04:51:28Z twobeers $

Author:

Joseph Heled

Nested Class Summary

Nested Classes

Modifier and Type	Class and Description
static class	ConsensusTreeBuilder.Method Supported consensus methods.

Field Summary

Fields

Modifier and Type	Field and Description
static java.lang.String	DEFAULT_SUPPORT_ATTRIBUTE_NAME Name of attribute specifing amount of support for branch

Method Summary

Methods

Modifier and Type	Method and Description
void	addProgressListener(ProgressListener listener)
abstract java.lang.String	getMethodDescription() Returns a human readable name of this consensus tree building method
java.lang.String	getSupportAttributeName()
boolean	isSupportAsPercent()
void	removeProgressListener(ProgressListener listener) Stops a ProgressListener from receiving progress.

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface jebl.evolution.trees.TreeBuilder

build

Field Detail

DEFAULT_SUPPORT_ATTRIBUTE_NAME

public static final java.lang.String DEFAULT_SUPPORT_ATTRIBUTE_NAME

Name of attribute specifing amount of support for branch

See Also:

Constant Field Values

Method Detail

getMethodDescription

public abstract java.lang.String getMethodDescription()

Returns a human readable name of this consensus tree building method

Returns:

A human readable name of this consensus tree building method

getSupportAttributeName

public java.lang.String getSupportAttributeName()

isSupportAsPercent

public boolean isSupportAsPercent()

addProgressListener

public void addProgressListener(ProgressListener listener)

Specified by:

addProgressListener in interface TreeBuilder<T extends Tree>

removeProgressListener

public void removeProgressListener(ProgressListener listener)

Stops a ProgressListener from receiving progress. Note: Due to threading, the the listener may keep receiving progress for a short while after this method returns.

Specified by:

removeProgressListener in interface TreeBuilder<T extends Tree>

Parameters:

listener - The ProgressListener for which to no longer report progress.