jebl.evolution.trees

Class SortedRootedTree

java.lang.Object

jebl.evolution.trees.FilteredRootedTree

jebl.evolution.trees.SortedRootedTree

All Implemented Interfaces:

Graph, RootedTree, Tree, Attributable

public class SortedRootedTree
extends FilteredRootedTree

Version:

$Id: SortedRootedTree.java 627 2007-01-15 03:50:40Z pepster $

Author:

Andrew Rambaut, Alexei Drummond

Nested Class Summary

Nested Classes

Modifier and Type	Class and Description
static class	SortedRootedTree.BranchOrdering

Nested classes/interfaces inherited from interface jebl.evolution.graphs.Graph

Graph.NoEdgeException, Graph.Utils

Constructor Summary

Constructors

Constructor and Description
SortedRootedTree(RootedTree source, java.util.Comparator<Node> comparator)
SortedRootedTree(RootedTree source, SortedRootedTree.BranchOrdering branchOrdering)

Method Summary

Methods

Modifier and Type	Method and Description
java.util.List<Node>	getChildren(Node node)

Methods inherited from class jebl.evolution.trees.FilteredRootedTree

conceptuallyUnrooted, getAdjacencies, getAttribute, getAttributeMap, getAttributeNames, getEdge, getEdgeLength, getEdges, getEdges, getExternalEdges, getExternalNodes, getHeight, getInternalEdges, getInternalNodes, getLength, getNode, getNodes, getNodes, getNodes, getParent, getRootNode, getSource, getTaxa, getTaxon, hasHeights, hasLengths, isExternal, isRoot, removeAttribute, renameTaxa, setAttribute

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

SortedRootedTree

public SortedRootedTree(RootedTree source,
                SortedRootedTree.BranchOrdering branchOrdering)

SortedRootedTree

public SortedRootedTree(RootedTree source,
                java.util.Comparator<Node> comparator)

Method Detail

getChildren

public java.util.List<Node> getChildren(Node node)

Specified by:

getChildren in interface RootedTree

Overrides:

getChildren in class FilteredRootedTree

Parameters:

node - the node whose children are being requested.

Returns:

the list of nodes that are the children of the given node. The set may be empty for a terminal node (a tip).