Uses of Class
jebl.evolution.trees.TreeBuilderFactory.DistanceModel

Packages that use TreeBuilderFactory.DistanceModel

Package	Description
jebl.evolution.align	Provides classes and interfaces for pairwise alignment of two sequences.
jebl.evolution.trees

Uses of TreeBuilderFactory.DistanceModel in jebl.evolution.align

Methods in jebl.evolution.align that return TreeBuilderFactory.DistanceModel

Modifier and Type	Method and Description
static TreeBuilderFactory.DistanceModel	SequenceAlignmentsDistanceMatrix.getDefaultDistanceModel(java.util.List<Sequence> seqs)

Methods in jebl.evolution.align with parameters of type TreeBuilderFactory.DistanceModel

Modifier and Type	Method and Description
static AlignmentTreeBuilderFactory.Result	AlignmentTreeBuilderFactory.build(Alignment alignment, TreeBuilderFactory.Method method, TreeBuilderFactory.DistanceModel model, ProgressListener progressListener)
static AlignmentTreeBuilderFactory.Result	AlignmentTreeBuilderFactory.build(Alignment alignment, TreeBuilderFactory.Method method, TreeBuilderFactory.DistanceModel model, ProgressListener progressListener, boolean useTwiceMaximumDistanceWhenPairwiseDistanceNotCalculatable)
static AlignmentTreeBuilderFactory.Result	AlignmentTreeBuilderFactory.build(java.util.List<Sequence> seqs, TreeBuilderFactory.Method method, PairwiseAligner aligner, ProgressListener progressListener, TreeBuilderFactory.DistanceModel model)

Constructors in jebl.evolution.align with parameters of type TreeBuilderFactory.DistanceModel

Constructor and Description
SequenceAlignmentsDistanceMatrix(java.util.List<Sequence> seqs, PairwiseAligner aligner, ProgressListener progress, TreeBuilderFactory.DistanceModel model)

Uses of TreeBuilderFactory.DistanceModel in jebl.evolution.trees

Methods in jebl.evolution.trees that return TreeBuilderFactory.DistanceModel

Modifier and Type	Method and Description
static TreeBuilderFactory.DistanceModel	TreeBuilderFactory.DistanceModel.valueOf(java.lang.String name) Returns the enum constant of this type with the specified name.
static TreeBuilderFactory.DistanceModel[]	TreeBuilderFactory.DistanceModel.values() Returns an array containing the constants of this enum type, in the order they are declared.