OverlapRessult (SnpEff 5.1 API)

java.lang.Object
- org.snpeff.binseq.indexer.OverlapRessult<T>

public class OverlapRessult<T extends BinarySequence>
extends java.lang.Object

An object used to store overlap parameters

- Field Summary
  
  Fields
  Modifier and Type Field Description
  
  int bestId
  
  long bestReference
  
  int bestScore
  
  T bestSequence
  
  boolean reverseWC
  
  int start
- Constructor Summary
  
  Constructors
  Constructor Description
  
  OverlapRessult()
- Method Summary
  
  All Methods Instance Methods Concrete Methods
  Modifier and Type Method Description
  
  java.lang.String toString()
  - Methods inherited from class java.lang.Object
    clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

start
```
public int start
```

bestScore
```
public int bestScore
```

bestSequence

public T extends BinarySequence bestSequence

bestReference
```
public long bestReference
```

bestId
```
public int bestId
```

reverseWC
```
public boolean reverseWC
```

Constructor Detail
- OverlapRessult
```
public OverlapRessult()
```

Method Detail
- toString
```
public java.lang.String toString()
```
  Overrides:
  
  toString in class java.lang.Object