Package org.snpeff.filter

Class VariantEffectFilter

java.lang.Object

org.snpeff.filter.VariantEffectFilter

All Implemented Interfaces:

Filter<VariantEffect>

public class VariantEffectFilter
extends java.lang.Object
implements Filter<VariantEffect>

A Generic ChangeEffect filter

Author:

pcingola

Constructor Summary

Constructors

Constructor	Description
VariantEffectFilter()

Method Summary

Modifier and Type	Method	Description
void	add(EffectType effType)
boolean	anythingSet()	Is any of the options set?
boolean	filter(VariantEffect variantEffect)	Filter a sequence change

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

VariantEffectFilter

public VariantEffectFilter()

Method Detail

add

public void add(EffectType effType)

anythingSet

public boolean anythingSet()

Is any of the options set?

Specified by:

anythingSet in interface Filter<VariantEffect>

Returns:

filter

public boolean filter(VariantEffect variantEffect)

Filter a sequence change

Specified by:

filter in interface Filter<VariantEffect>

Returns:

true if it passes the filter