Package org.snpeff.gtex

Class GtexExperiment

java.lang.Object

org.snpeff.gtex.GtexExperiment

public class GtexExperiment
extends java.lang.Object

A 'column' in a GTEx file (values from one experiment

Author:

pcingola

Constructor Summary

Constructors

Constructor	Description
GtexExperiment(Gtex gtex, java.lang.String line)
GtexExperiment(Gtex gtex, java.lang.String id, java.lang.String tissueType, java.lang.String tissueTypeDetail)

Method Summary

Modifier and Type	Method	Description
void	add(double value)
Gtex	getGtex()
java.lang.String	getId()
java.lang.String	getTissueType()
java.lang.String	getTissueTypeDetail()
double	getValue(int idx)
double	getValue(java.lang.String geneId)	Get value by geneID
protected void	parse(java.lang.String line)
int	size()
java.lang.String	toString()
java.lang.String	toStringAll()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

GtexExperiment

public GtexExperiment(Gtex gtex,
                      java.lang.String line)

GtexExperiment

public GtexExperiment(Gtex gtex,
                      java.lang.String id,
                      java.lang.String tissueType,
                      java.lang.String tissueTypeDetail)

Method Detail

add

public void add(double value)

getGtex

public Gtex getGtex()

getId

public java.lang.String getId()

getTissueType

public java.lang.String getTissueType()

getTissueTypeDetail

public java.lang.String getTissueTypeDetail()

getValue

public double getValue(int idx)

getValue

public double getValue(java.lang.String geneId)

Get value by geneID

Parameters:

geneId -

Returns:

parse

protected void parse(java.lang.String line)

size

public int size()

toString

public java.lang.String toString()

Overrides:

toString in class java.lang.Object

toStringAll

public java.lang.String toStringAll()