```
public class CircularCorrection
extends java.lang.Object
```
Correct circular genomic coordinates Nomenclature: We use coordinates at the beginning of the chromosme and negative coordinates

All Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`boolean`	`correct()`	Return a circular corrected transcript or null if no correction is needed
`boolean`	`isCorrected()`
`boolean`	`isDebug()`
`void`	`setCorrectLargeGap(boolean correctLargeGap)`
`void`	`setDebug(boolean debug)`
`java.lang.String`	`toString()`

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

public CircularCorrection(Transcript tr)

public CircularCorrection(Transcript tr,
                          int chrLen)

correct
```
public boolean correct()
```
Return a circular corrected transcript or null if no correction is needed

public void setCorrectLargeGap(boolean correctLargeGap)

public void setDebug(boolean debug)

Constructor	Description
`CircularCorrection(Transcript tr)`
`CircularCorrection(Transcript tr, int chrLen)`

Class CircularCorrection