Uses of Class
org.snpeff.interval.BioType

Packages that use BioType

Package	Description
org.snpeff.interval
org.snpeff.snpEffect
org.snpeff.vcf

Uses of BioType in org.snpeff.interval

Methods in org.snpeff.interval that return BioType

Modifier and Type	Method	Description
static BioType	BioType.coding(boolean isCoding)	Basic bioTypes for coding / non-coding genes
BioType	GffMarker.getBiotype()
BioType	Gene.getBioType()
BioType	Transcript.getBioType()
protected BioType	GffMarker.getBiotypeGeneric()
BioType	GffMarker.getGeneBiotype()
BioType	GffMarker.getTranscriptBiotype()
static BioType	BioType.parse(java.lang.String str)	Parse a BioType
static BioType	BioType.valueOf(java.lang.String name)	Returns the enum constant of this type with the specified name.
static BioType[]	BioType.values()	Returns an array containing the constants of this enum type, in the order they are declared.

Methods in org.snpeff.interval with parameters of type BioType

Modifier and Type	Method	Description
void	Gene.setBioType(BioType bioType)
void	Transcript.setBioType(BioType bioType)

Constructors in org.snpeff.interval with parameters of type BioType

Constructor	Description
Gene(Marker parent, int start, int end, boolean strandMinus, java.lang.String id, java.lang.String geneName, BioType bioType)

Uses of BioType in org.snpeff.snpEffect

Methods in org.snpeff.snpEffect that return BioType

Modifier and Type	Method	Description
BioType	VariantEffect.getBiotype()	Get biotype

Uses of BioType in org.snpeff.vcf

Methods in org.snpeff.vcf that return BioType

Modifier and Type	Method	Description
BioType	VcfEffect.getBioType()

Methods in org.snpeff.vcf with parameters of type BioType

Modifier and Type	Method	Description
void	VcfEffect.setBioType(BioType bioType)