IntervalNode (SnpEff 5.1 API)

java.lang.Object
- org.snpeff.interval.tree.IntervalNode

All Implemented Interfaces:

java.io.Serializable
```
public class IntervalNode
extends java.lang.Object
implements java.io.Serializable
```
Node for interval tree structure

Author:

pcingola

See Also:

Serialized Form

Field Summary

Fields
Modifier and Type Field Description

protected int center

protected Marker[] intervalsCenter

protected IntervalNode leftNode

protected IntervalNode rightNode

Constructor Summary

Constructors
Constructor Description

IntervalNode()

IntervalNode(Markers markers)

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`protected void`	`build(Markers markers)`	Build interval tree
`java.lang.Integer`	`getCenter()`
`IntervalNode`	`getLeft()`
`IntervalNode`	`getRight()`
`protected IntervalNode`	`newNode(Markers markers)`	Create a new node
`Markers`	`query(Interval queryInterval)`	Perform an interval intersection query on the node
`Markers`	`stab(java.lang.Integer point)`	Perform a stabbing query on the node
`java.lang.String`	`toString()`

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

center
```
protected int center
```

leftNode
```
protected IntervalNode leftNode
```

rightNode
```
protected IntervalNode rightNode
```

intervalsCenter
```
protected Marker[] intervalsCenter
```

Constructor Detail

IntervalNode
```
public IntervalNode()
```

IntervalNode

public IntervalNode(Markers markers)

Method Detail
- build
```
protected void build(Markers markers)
```
  Build interval tree
- getCenter
```
public java.lang.Integer getCenter()
```
- getLeft
```
public IntervalNode getLeft()
```
- getRight
```
public IntervalNode getRight()
```
- newNode
```
protected IntervalNode newNode(Markers markers)
```
  Create a new node
- query
```
public Markers query(Interval queryInterval)
```
  Perform an interval intersection query on the node
  
  Parameters:
  
  queryMarker - : The interval to intersect
  
  Returns:
  
  All intervals containing 'target'
- stab
```
public Markers stab(java.lang.Integer point)
```
  Perform a stabbing query on the node
  
  Parameters:
  
  point - the time to query at
  
  Returns:
  
  All intervals containing time
- toString
```
public java.lang.String toString()
```
  Overrides:
  
  toString in class java.lang.Object