Package org.snpeff.osCmd

Class OsCmdQueue

  • All Implemented Interfaces:
    java.lang.Iterable<OsCmdRunner>
    public class OsCmdQueue
extends java.lang.Object
implements java.lang.Iterable<OsCmdRunner>
    A queue of commands to be run. They are run in multiple threads (default number of threads = number of CPUs in the computer)
    Author:
    pcingola

    • Field Summary

      Fields 
      Modifier and Type Field Description
      static boolean debug  

    • Constructor Summary

      Constructors 
      Constructor Description
      OsCmdQueue()  

    • Method Summary

      All Methods Instance Methods Concrete Methods 
      Modifier and Type Method Description
      void add​(OsCmdRunner cmd)
      Add command to be executed
      void add​(OsCmdRunner cmd, java.lang.String outputFile)
      Add command to be executed, only if 'outputFile' does not exist
      java.util.Iterator<OsCmdRunner> iterator()  
      void kill()
      Kill all commands
      void run()
      Run commands
      void setNumThreads​(int numThreads)  
      void setRedirectToOutput​(boolean redirectToOutput)  
      void setVerbose​(boolean verbose)  
      int size()  
      java.lang.String toString()  

      • Methods inherited from class java.lang.Object

        clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

      • Methods inherited from interface java.lang.Iterable

        forEach, spliterator

    • Field Detail

      • debug

        public static boolean debug

    • Constructor Detail

      • OsCmdQueue

        public OsCmdQueue()

    • Method Detail

      • add

        public void add​(OsCmdRunner cmd)
        Add command to be executed
        Parameters:
        cmd -

      • add

        public void add​(OsCmdRunner cmd,
                java.lang.String outputFile)
        Add command to be executed, only if 'outputFile' does not exist
        Parameters:
        cmd -
        outputFile -

      • iterator

        public java.util.Iterator<OsCmdRunner> iterator()
        Specified by:
        iterator in interface java.lang.Iterable<OsCmdRunner>

      • kill

        public void kill()
        Kill all commands

      • run

        public void run()
        Run commands

      • setNumThreads

        public void setNumThreads​(int numThreads)

      • setRedirectToOutput

        public void setRedirectToOutput​(boolean redirectToOutput)

      • setVerbose

        public void setVerbose​(boolean verbose)

      • size

        public int size()

      • toString

        public java.lang.String toString()
        Overrides:
        toString in class java.lang.Object