GeneIds (SnpEff 5.1 API)

java.lang.Object
- org.snpeff.reactome.GeneIds

```
public class GeneIds
extends java.lang.Object
```
Maps different Gene IDs: - ENSEMBL Gene ID to transcript ID - ENSEMBL Gene ID to Gene Name - ENSEMBL Gene ID to Refseq Gene ID - ENSEMBL Gene ID to Refseq Protein ID

Author:

pcingola

Constructor Summary

Constructors
Constructor Description

GeneIds(java.lang.String fileName)

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`IdMap`	`getId2geneName()`
`IdMap`	`getId2refseqId()`
`IdMap`	`getId2refseqProtId()`
`IdMap`	`getId2tr()`
`protected void`	`load(java.lang.String fileName)`	Load data from file

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

GeneIds

public GeneIds(java.lang.String fileName)

Method Detail

getId2geneName
```
public IdMap getId2geneName()
```

getId2refseqId
```
public IdMap getId2refseqId()
```

getId2refseqProtId
```
public IdMap getId2refseqProtId()
```

getId2tr
```
public IdMap getId2tr()
```

load

protected void load(java.lang.String fileName)

Load data from file

Parameters:: fileName -