Package org.snpeff.sam

Class SamHeaderRecord

  • Direct Known Subclasses:
    SamHeaderRecordSq
    public abstract class SamHeaderRecord
extends java.lang.Object
    Sam header record
    Author:
    pcingola

    • Constructor Summary

      Constructors 
      Constructor Description
      SamHeaderRecord​(java.lang.String line, java.lang.String recordTypeCode)  

    • Method Summary

      All Methods Instance Methods Abstract Methods Concrete Methods 
      Modifier and Type Method Description
      java.lang.String getRecordTypeCode()  
      protected void init()
      Initialize records before parsing
      void parse​(java.lang.String line)
      Parse a line for this record type
      protected abstract void parseField​(java.lang.String tag, java.lang.String value)
      Parse a field for this record

      • Methods inherited from class java.lang.Object

        clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

    • Constructor Detail

      • SamHeaderRecord

        public SamHeaderRecord​(java.lang.String line,
                       java.lang.String recordTypeCode)

    • Method Detail

      • getRecordTypeCode

        public java.lang.String getRecordTypeCode()

      • init

        protected void init()
        Initialize records before parsing

      • parse

        public void parse​(java.lang.String line)
        Parse a line for this record type
        Parameters:
        line -
        recordTypeCode -

      • parseField

        protected abstract void parseField​(java.lang.String tag,
                                   java.lang.String value)
        Parse a field for this record
        Parameters:
        tag -
        value -