TestCasesIntegrationNextProt (SnpEff 5.1 API)

java.lang.Object
- org.snpeff.snpEffect.testCases.integration.TestCasesIntegrationBase
- - org.snpeff.snpEffect.testCases.integration.TestCasesIntegrationNextProt

public class TestCasesIntegrationNextProt
extends TestCasesIntegrationBase

Test NextProt databases

Author:: pcingola

Field Summary
- Fields inherited from class org.snpeff.snpEffect.testCases.integration.TestCasesIntegrationBase
  BASE_DIR, debug, ignoreErrors, prefixes, shiftHgvs, SHOW_EVERY, testsDir, testType, verbose

Constructor Summary

Constructors
Constructor Description

TestCasesIntegrationNextProt()

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`void`	`test_01_build()`
`void`	`test_02_ann()`
`void`	`test_02_eff()`
`void`	`test_03_ann()`
`void`	`test_03_eff()`
`void`	`test_04_parse()`
`void`	`test_05_ann_disulphide_bond()`
`void`	`test_06_ann_disulphide_bond()`
`void`	`test_07()`

Methods inherited from class org.snpeff.snpEffect.testCases.integration.TestCasesIntegrationBase
applyTranscript, before, build, buildAndCompare, buildEmbl, buildGeneBank, buildGeneBank, buildGetBuildCmd, buildGff3AndCompare, buildGtfAndCompare, checkHgvs, checkNoChange, checkTranscriptError, compareHgvs, compareHgvs, compareVep, compareVepSO, init, loadSnpEffectPredictor, path, pathClassName, pathMigrate, showTranscripts, showTranscripts, snpEffect, snpEffect, snpEffectCancer

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail
- TestCasesIntegrationNextProt
```
public TestCasesIntegrationNextProt()
```

Method Detail

test_01_build
```
@Test
public void test_01_build()
```

test_02_ann
```
@Test
public void test_02_ann()
```

test_02_eff
```
@Test
public void test_02_eff()
```

test_03_ann
```
@Test
public void test_03_ann()
```

test_03_eff
```
@Test
public void test_03_eff()
```

test_04_parse
```
@Test
public void test_04_parse()
```

test_05_ann_disulphide_bond

@Test
public void test_05_ann_disulphide_bond()

test_06_ann_disulphide_bond

@Test
public void test_06_ann_disulphide_bond()

test_07
```
@Test
public void test_07()
```