Package org.snpeff.snpEffect.testCases.unity

Class TestCasesHypergeometric

java.lang.Object

org.snpeff.snpEffect.testCases.unity.TestCasesHypergeometric

public class TestCasesHypergeometric
extends java.lang.Object

Test for Hypergeometric distribution and Fisher exact test

Author:

pcingola

Field Summary

Fields

Modifier and Type	Field	Description
static double	MAX_DIFF

Constructor Summary

Constructors

Constructor	Description
TestCasesHypergeometric()

Method Summary

Modifier and Type	Method	Description
void	generate_test()	Create commands in R to run and get test results
void	test_0()
void	test_01_hyper()
void	test_02_hyper()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

MAX_DIFF

public static double MAX_DIFF

Constructor Detail

TestCasesHypergeometric

public TestCasesHypergeometric()

Method Detail

generate_test

public void generate_test()

Create commands in R to run and get test results

test_0

@Test
public void test_0()

test_01_hyper

@Test
public void test_01_hyper()

test_02_hyper

@Test
public void test_02_hyper()