Package org.snpeff.stats

Class IntStats

java.lang.Object

org.snpeff.stats.IntStats

All Implemented Interfaces:

java.io.Serializable

public class IntStats
extends java.lang.Object
implements java.io.Serializable

A simple class that does some basic statistics on integer numbers

Author:

pcingola

See Also:

Serialized Form

Constructor Summary

Constructors

Constructor	Description
IntStats()

Method Summary

Modifier and Type	Method	Description
int	getCount()
int	getCount(int sample)
int	getMax()
int	getMaxBins()
int	getMaxCount()
double	getMean()
double	getMedian()	Calculate the median
int	getMin()
int	getMinCount()
double	getQuantile(double quantile)	Get value at a given quantile
double	getStd()	Calculate the standard deviation
long	getSum()
boolean	isValidData()	Do we have any data
void	sample(int num)	Use 'num' as a sample
void	setMaxBins(int maxBins)
java.lang.String	toString()
java.lang.String	toStringCounts()	Show a histogram as a list of numbers
java.lang.String	toStringHisto()	Show a histogram as a list of numbers
java.lang.String	toStringPlot(java.lang.String title, java.lang.String xAxisLabel, boolean barChart)	Create a histogram plot using Google charts
java.lang.String	toStringTab()
static java.lang.String	toStringTabTitle()
java.lang.String	toStringValues()	Histogram values

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

IntStats

public IntStats()

Method Detail

toStringTabTitle

public static java.lang.String toStringTabTitle()

getCount

public int getCount()

getCount

public int getCount(int sample)

getMax

public int getMax()

getMaxBins

public int getMaxBins()

getMaxCount

public int getMaxCount()

getMean

public double getMean()

getMedian

public double getMedian()

Calculate the median

Returns:

getMin

public int getMin()

getMinCount

public int getMinCount()

getQuantile

public double getQuantile(double quantile)

Get value at a given quantile

Parameters:

quantile -

Returns:

getStd

public double getStd()

Calculate the standard deviation

Returns:

getSum

public long getSum()

isValidData

public boolean isValidData()

Do we have any data

Returns:

sample

public void sample(int num)

Use 'num' as a sample

Parameters:

num -

setMaxBins

public void setMaxBins(int maxBins)

toString

public java.lang.String toString()

Overrides:

toString in class java.lang.Object

toStringCounts

public java.lang.String toStringCounts()

Show a histogram as a list of numbers

Returns:

toStringHisto

public java.lang.String toStringHisto()

Show a histogram as a list of numbers

Returns:

toStringPlot

public java.lang.String toStringPlot(java.lang.String title,
                                     java.lang.String xAxisLabel,
                                     boolean barChart)

Create a histogram plot using Google charts

Returns:

toStringTab

public java.lang.String toStringTab()

toStringValues

public java.lang.String toStringValues()

Histogram values

Returns: