VcfStats (SnpEff 5.1 API)

java.lang.Object
- org.snpeff.stats.VcfStats

All Implemented Interfaces:

SamplingStats<VcfEntry>
```
public class VcfStats
extends java.lang.Object
implements SamplingStats<VcfEntry>
```
VCF statistics: This are usually multi-sample statistics

Author:

pcingola

Constructor Summary

Constructors
Constructor Description

VcfStats()

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`int`	`getCountMultiallelic()`
`GenotypeStats`	`getGenotypeStats()`
`IntStats`	`getQualityStats()`
`java.lang.String`	`getQualityStatsHistoUrl()`
`TsTvStats`	`getTsTvStats()`
`TsTvStats`	`getTsTvStatsKnown()`
`boolean`	`hasData()`	Does this statistic have any data?
`void`	`sample(VcfEntry vcfEntry)`	Analyze one sample

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

- Constructor Detail
  - VcfStats
```
public VcfStats()
```
- Method Detail
  - getCountMultiallelic
```
public int getCountMultiallelic()
```
  - getGenotypeStats
```
public GenotypeStats getGenotypeStats()
```
  - getQualityStats
```
public IntStats getQualityStats()
```
  - getQualityStatsHistoUrl
```
public java.lang.String getQualityStatsHistoUrl()
```
  - getTsTvStats
```
public TsTvStats getTsTvStats()
```
  - getTsTvStatsKnown
```
public TsTvStats getTsTvStatsKnown()
```
  - hasData
```
public boolean hasData()
```
    Description copied from interface: SamplingStats
    
    Does this statistic have any data?
    
    Specified by:
    
    hasData in interface SamplingStats<VcfEntry>
    
    Returns:
  - sample
```
public void sample(VcfEntry vcfEntry)
```
    Description copied from interface: SamplingStats
    
    Analyze one sample
    
    Specified by:
    
    sample in interface SamplingStats<VcfEntry>