org.snpeff.fileIterator.BinSeqFileIterator<T>

Direct Known Subclasses:: DnaSeqFileIterator, DnaSeqIdFileIterator, DnaSeqPeFileIterator

public class BinSeqFileIterator<T extends BinarySequence> extends Object implements Iterable<T>, Iterator<T>

Reads all sequences from a file Warning: You should always call "close()" at the end of the iteration.

Constructor Details
- BinSeqFileIterator
  
  public BinSeqFileIterator(String fileName)
Method Details
- close
  
  public void close()
  
  Close file (if not already done)
- hasNext
  
  public boolean hasNext()
  
  Specified by:
  
  hasNext in interface Iterator<T extends BinarySequence>
- iterator
  
  public Iterator<T> iterator()
  
  Specified by:
  
  iterator in interface Iterable<T extends BinarySequence>
- next
  
  public T next()
  
  Specified by:
  
  next in interface Iterator<T extends BinarySequence>
- remove
  
  public void remove()
  
  Specified by:
  
  remove in interface Iterator<T extends BinarySequence>

Class BinSeqFileIterator<T extends BinarySequence>

Constructor Summary