org.snpeff.fileIterator.SeekableBufferedReader

All Implemented Interfaces:: Closeable, AutoCloseable, Readable

public class SeekableBufferedReader extends BufferedReader

A buffered reader for a file. It allows to 'seek' and 'readLine()'

Author:: pablocingolani

Field Summary

Fields

Modifier and Type

Field

Description

static int

DEFAULT_BUFFER_SIZE

Fields inherited from class java.io.Reader
lock
Constructor Summary

Constructors

Constructor

Description

SeekableBufferedReader(String fileName)

SeekableBufferedReader(String fileName, int bufferSize)
Method Summary

Modifier and Type

Method

Description

void

close()

boolean

equals(Object arg0)

long

getFilePointer()

int

hashCode()

void

mark(int readAheadLimit)

boolean

markSupported()

void

open(String fileName)

int

read()

int

read(char[] buff)

int

read(char[] cbuf, int off, int len)

int

read(CharBuffer arg0)

String

readLine()

boolean

ready()

void

reset()

void

seek(long pos)

Seek to a position in the file

long

skip(long n)

String

toString()

Methods inherited from class java.io.BufferedReader
lines

Methods inherited from class java.io.Reader
nullReader, transferTo

Methods inherited from class java.lang.Object
clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Field Details
- DEFAULT_BUFFER_SIZE
  
  public static int DEFAULT_BUFFER_SIZE
Constructor Details
- SeekableBufferedReader
  
  public SeekableBufferedReader(String fileName) throws IOException
  
  Throws:
  
  IOException
- SeekableBufferedReader
  
  public SeekableBufferedReader(String fileName, int bufferSize) throws IOException
  
  Throws:
  
  IOException
Method Details
- close
  
  public void close() throws IOException
  
  Specified by:
  
  close in interface AutoCloseable
  
  Specified by:
  
  close in interface Closeable
  
  Overrides:
  
  close in class BufferedReader
  
  Throws:
  
  IOException
- equals
  
  public boolean equals(Object arg0)
  
  Overrides:
  
  equals in class Object
- getFilePointer
  
  public long getFilePointer()
- hashCode
  
  public int hashCode()
  
  Overrides:
  
  hashCode in class Object
- mark
  
  public void mark(int readAheadLimit) throws IOException
  
  Overrides:
  
  mark in class BufferedReader
  
  Throws:
  
  IOException
- markSupported
  
  public boolean markSupported()
  
  Overrides:
  
  markSupported in class BufferedReader
- open
  
  public void open(String fileName) throws IOException
  
  Throws:
  
  IOException
- read
  
  public int read() throws IOException
  
  Overrides:
  
  read in class BufferedReader
  
  Throws:
  
  IOException
- read
  
  public int read(char[] buff) throws IOException
  
  Overrides:
  
  read in class Reader
  
  Throws:
  
  IOException
- read
  
  public int read(char[] cbuf, int off, int len) throws IOException
  
  Overrides:
  
  read in class BufferedReader
  
  Throws:
  
  IOException
- read
  
  public int read(CharBuffer arg0) throws IOException
  
  Specified by:
  
  read in interface Readable
  
  Overrides:
  
  read in class Reader
  
  Throws:
  
  IOException
- readLine
  
  public String readLine() throws IOException
  
  Overrides:
  
  readLine in class BufferedReader
  
  Throws:
  
  IOException
- ready
  
  public boolean ready() throws IOException
  
  Overrides:
  
  ready in class BufferedReader
  
  Throws:
  
  IOException
- reset
  
  public void reset() throws IOException
  
  Overrides:
  
  reset in class BufferedReader
  
  Throws:
  
  IOException
- seek
  
  public void seek(long pos) throws IOException
  
  Seek to a position in the file
  
  Throws:
  
  IOException
- skip
  
  public long skip(long n) throws IOException
  
  Overrides:
  
  skip in class BufferedReader
  
  Throws:
  
  IOException
- toString
  
  public String toString()
  
  Overrides:
  
  toString in class Object

Class SeekableBufferedReader

Field Summary

Fields inherited from class java.io.Reader

Constructor Summary

Method Summary

Methods inherited from class java.io.BufferedReader

Methods inherited from class java.io.Reader

Methods inherited from class java.lang.Object

Field Details

DEFAULT_BUFFER_SIZE

Constructor Details

SeekableBufferedReader

SeekableBufferedReader

Method Details

close

equals

getFilePointer

hashCode

mark

markSupported

open

read

read

read

read

readLine

ready

reset

seek

skip

toString