Uses of Class
org.snpeff.geneOntology.GoTerm
Packages that use GoTerm
-
Uses of GoTerm in org.snpeff.geneOntology
Methods in org.snpeff.geneOntology that return GoTermModifier and TypeMethodDescriptionAdd a GOTerm (if not already in this GOTerms) WARNING: Creates 'fake' symbolNames based on symbolIds.GoTerms.disjointSet(List<GoTerm> goTermList, int activeSets) Produce a GOTerm based on a list of GOTerms and a 'mask'GoTerm.getFirstChild()Return first child in the listGoTerm.getFirstParent()Return first parent in the listGoTerm.rootNode()Get the root nodeMethods in org.snpeff.geneOntology that return types with arguments of type GoTermModifier and TypeMethodDescriptionGoTerm.getChilds()GoTerms.getGoTermsByGoTermAcc()GoTerms.getGoTermsBySymbolId()GoTerms.getGoTermsBySymbolId(String symbolId) GoTerm.getParents()GoTerms.iterator()Iterate through each GOterm in this GOTermsGoTerms.listTopTerms(int numberToSelect) Select a number of GOTermsGoTerms.rootNodes()GoTerms.values()Methods in org.snpeff.geneOntology with parameters of type GoTermModifier and TypeMethodDescriptionAdd a GOTerm (if not already in this GOTerms) WARNING: Creates 'fake' symbolNames based on symbolIds.voidAdd a goTermId as a child of this GOTerm Also adds 'this' as parent of 'goTerm'booleanGoTerms.addSymbolId(GoTerm goTerm, String symbolId) Add a symbolId (as well as all needed mappings)voidGoTerm.addSymbolsFromChilds(GoTerm goTerm) Add all symbols from childs to goTermintvoidGoTerm.intersection(GoTerm goTerm) Intersects this term with 'goTerm' (intersects 'symbolIdSet' and 'interestingSymbolIdSet').voidPerform a 'set minus' between this term and 'goTerm' (set minus for 'symbolIdSet' and 'interestingSymbolIdSet').voidUnion this term with 'goTerm' (union for 'symbolIdSet' and 'interestingSymbolIdSet').Method parameters in org.snpeff.geneOntology with type arguments of type GoTermModifier and TypeMethodDescriptionGoTerms.disjointSet(List<GoTerm> goTermList, int activeSets) Produce a GOTerm based on a list of GOTerms and a 'mask'voidvoidGoTerm.setParents(HashSet<GoTerm> parents) Constructor parameters in org.snpeff.geneOntology with type arguments of type GoTerm