Package org.snpeff.gtex

Class Gtex

java.lang.Object
org.snpeff.gtex.Gtex
All Implemented Interfaces:
Iterable<GtexExperiment>
public class Gtex extends Object implements Iterable<GtexExperiment>
Load data from GTEx files. References: http://www.broadinstitute.org/gtex/
Author:
pcingola

  • Field Details

  • Constructor Details

    • Gtex

      public Gtex()

  • Method Details

    • getGeneIds

      public Collection<String> getGeneIds()

    • getIndex

      public int getIndex(String geneId)

    • iterator

      public Iterator<GtexExperiment> iterator()
      Specified by:
      iterator in interface Iterable<GtexExperiment>

    • load

      public void load(String samples, String data)

    • loadData

      protected void loadData(String data)
      Load data: Experimental (sometimes normalized) values
      Parameters:
      data -

    • loadSamples

      protected void loadSamples(String samples)
      Load samples names
      Parameters:
      samples -

    • setVerbose

      public void setVerbose(boolean verbose)

    • toString

      public String toString()
      Overrides:
      toString in class Object