Package org.snpeff.interval

Class CircularCorrection

java.lang.Object
org.snpeff.interval.CircularCorrection
public class CircularCorrection extends Object
Correct circular genomic coordinates Nomenclature: We use coordinates at the beginning of the chromosme and negative coordinates

  • Constructor Details

    • CircularCorrection

      public CircularCorrection(Transcript tr)

    • CircularCorrection

      public CircularCorrection(Transcript tr, int chrLen)

  • Method Details

    • correct

      public boolean correct()
      Return a circular corrected transcript or null if no correction is needed

    • isCorrected

      public boolean isCorrected()

    • isDebug

      public boolean isDebug()

    • setCorrectLargeGap

      public void setCorrectLargeGap(boolean correctLargeGap)

    • setDebug

      public void setDebug(boolean debug)

    • toString

      public String toString()
      Overrides:
      toString in class Object