Uses of Class
org.snpeff.interval.SpliceSite
Packages that use SpliceSite
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Uses of SpliceSite in org.snpeff.interval
Subclasses of SpliceSite in org.snpeff.intervalModifier and TypeClassDescriptionclassInterval for a splice site acceptor Note: Splice sites donnor are defined as the last 2 bases of an intron Reference: http://en.wikipedia.org/wiki/RNA_splicingclassA (putative) branch site.classA (putative) U12 branch site.classInterval for a splice site donnor Note: Splice sites donnor are defined as the first 2 bases of an intron Reference: http://en.wikipedia.org/wiki/RNA_splicingclassInterval for a splice site acceptor From Sequence Ontology: A sequence variant in which a change has occurred within the region of the splice site, either within 1-3 bases of the exon or 3-8 bases of the intron.Methods in org.snpeff.interval that return types with arguments of type SpliceSiteModifier and TypeMethodDescriptionExon.getSpliceSites()Intron.getSpliceSites()Transcript.spliceSites()Methods in org.snpeff.interval with parameters of type SpliceSiteModifier and TypeMethodDescriptionvoidExon.add(SpliceSite ss) Add a splice site to the collectionvoidIntron.add(SpliceSite ss) Add a splice site to the collectionvoidTranscript.add(SpliceSite spliceSite) Add a SpliceSite