org.snpeff.interval.codonChange.CodonChangeDup

public class CodonChangeDup extends CodonChangeStructural

Calculate codon changes produced by a duplication

Constructor Details
- CodonChangeDup
  
  public CodonChangeDup(Variant variant, Transcript transcript, VariantEffects variantEffects)
Method Details
- effectTranscript
  
  protected void effectTranscript()
  
  Specified by:
  
  effectTranscript in class CodonChangeStructural
- exons
  
  protected void exons()
  
  Description copied from class: CodonChangeStructural
  
  Variant affect one or more exons
  
  Specified by:
  
  exons in class CodonChangeStructural
- exonsCoding
  
  protected void exonsCoding()
  
  One or more exons fully included (no partial overlap)
  
  Specified by:
  
  exonsCoding in class CodonChangeStructural
- exonsNoncoding
  
  protected void exonsNoncoding()
  
  Effects for non-coding transcripts
  
  Specified by:
  
  exonsNoncoding in class CodonChangeStructural
- intron
  
  protected void intron()
  
  Inversion does not intersect any exon
  
  Specified by:
  
  intron in class CodonChangeStructural

Class CodonChangeDup

Field Summary