Package org.snpeff.nextProt

Class NextProtXmlIsoform

java.lang.Object
org.snpeff.nextProt.NextProtXmlNode
org.snpeff.nextProt.NextProtXmlIsoform
public class NextProtXmlIsoform extends NextProtXmlNode
Mimics the 'isoform-mapping' in a NextProt XML file
Author:
Pablo Cingolani

  • Constructor Details

    • NextProtXmlIsoform

      public NextProtXmlIsoform(String accession)

  • Method Details

    • addProteinMapping

      public void addProteinMapping(Attributes attributes)
      Add a transcript mapping

    • addTranscriptMapping

      public void addTranscriptMapping(Attributes attributes)
      Add a protein mapping

    • getProteinIds

      public Set<String> getProteinIds()

    • getSequence

      public String getSequence()

    • getTranscriptIds

      public Set<String> getTranscriptIds()

    • setSequence

      public void setSequence(String sequence)
      Add an Isoform sequence

    • toString

      public String toString()
      Overrides:
      toString in class Object