Package org.snpeff.probablility

Class Binomial

java.lang.Object
org.snpeff.probablility.Binomial
public class Binomial extends Object
Calculate binomial distribution References http://en.wikipedia.org/wiki/Binomial_distribution
Author:
pcingola

  • Field Summary

    Fields
    Modifier and Type
    Field
    Description
    static double
    EPSILON
    A small number

  • Constructor Summary

    Constructors
    Constructor
    Description
    Binomial()
     

  • Method Summary

    Modifier and Type
    Method
    Description
    double
    cdf(double p, int k, int n)
    Cumulative probability function P( K <= k )
    double
    cdfUp(double p, int k, int n)
    Cumulative probability function, upper tail P( K > k )
    double
    cdfUpEq(double p, int k, int n)
    Cumulative probability function, upper tail P( K >= k )
    static Binomial
    get()
     
    double
    pdf(double p, int k, int n)
    Probability density function
    double
    pdfLog(double p, int k, int n)
     
    String
    toR(double p, int k, int n)
    Convert values to 'R' command

    Methods inherited from class java.lang.Object

    clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

  • Field Details

    • EPSILON

      public static double EPSILON
      A small number

  • Constructor Details

    • Binomial

      public Binomial()

  • Method Details

    • get

      public static Binomial get()

    • cdf

      public double cdf(double p, int k, int n)
      Cumulative probability function P( K <= k )
      Parameters:
      p - : probability of a success in a single Bernoulli trial
      k - : Number of successes
      n - : Number of trials
      Returns:

    • cdfUp

      public double cdfUp(double p, int k, int n)
      Cumulative probability function, upper tail P( K > k )
      Parameters:
      p - : probability of a success in a single Bernoulli trial
      k - : Number of successes
      n - : Number of trials
      Returns:

    • cdfUpEq

      public double cdfUpEq(double p, int k, int n)
      Cumulative probability function, upper tail P( K >= k )
      Parameters:
      p - : probability of a success in a single Bernoulli trial
      k - : Number of successes
      n - : Number of trials
      Returns:

    • pdf

      public double pdf(double p, int k, int n)
      Probability density function
      Parameters:
      p - : probability of a success in a single Bernoulli trial
      k - : Number of successes
      n - : Number of trials
      Returns:

    • pdfLog

      public double pdfLog(double p, int k, int n)

    • toR

      public String toR(double p, int k, int n)
      Convert values to 'R' command
      Returns: