Package org.snpeff.probablility.bootstrap

Class ReSampleInt

java.lang.Object
org.snpeff.probablility.bootstrap.ReSampleInt
Direct Known Subclasses:
ReSampleMap, ReSampleMapRank
public class ReSampleInt extends Object
Re-sample statistic Statistic is a sum of a set of integer numbers (e.g. ranks). The statistic is sampled and PDF/CDF can be calculated from empirical random re-sampling.
Author:
pablocingolani

  • Constructor Summary

    Constructors
    Constructor
    Description
    ReSampleInt(int[] scores, int sampleSize)
     

  • Method Summary

    Modifier and Type
    Method
    Description
    double
    cdf(int number)
    Cummulative distribution for this number
    protected void
    clearStats()
    Clear previous statistics
    protected int
    evaluate()
    Random sample and evaluate
    int
    max()
     
    int
    min()
     
    int
    quantile(double quantile)
    Smallest number whose CDF is larger than a given quantile.
    void
    resample(int iterations)
    Re-sample 'iterations' times
    void
    setVerbose(boolean verbose)
     
    String
    toString()
     

    Methods inherited from class java.lang.Object

    clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

  • Constructor Details

    • ReSampleInt

      public ReSampleInt(int[] scores, int sampleSize)

  • Method Details

    • cdf

      public double cdf(int number)
      Cummulative distribution for this number
      Parameters:
      number -
      Returns:

    • clearStats

      protected void clearStats()
      Clear previous statistics

    • evaluate

      protected int evaluate()
      Random sample and evaluate

    • max

      public int max()

    • min

      public int min()

    • quantile

      public int quantile(double quantile)
      Smallest number whose CDF is larger than a given quantile. I.e. x such that P[ X <= x ] >= Quantile
      Parameters:
      quantile -
      Returns:

    • resample

      public void resample(int iterations)
      Re-sample 'iterations' times
      Parameters:
      iterations -

    • setVerbose

      public void setVerbose(boolean verbose)

    • toString

      public String toString()
      Overrides:
      toString in class Object