Package org.snpeff.sam

Class SamHeaderRecord

java.lang.Object
org.snpeff.sam.SamHeaderRecord
Direct Known Subclasses:
SamHeaderRecordSq
public abstract class SamHeaderRecord extends Object
Sam header record
Author:
pcingola

  • Constructor Details

    • SamHeaderRecord

      public SamHeaderRecord(String line, String recordTypeCode)

  • Method Details

    • getRecordTypeCode

      public String getRecordTypeCode()

    • init

      protected void init()
      Initialize records before parsing

    • parse

      public void parse(String line)
      Parse a line for this record type
      Parameters:
      line -
      recordTypeCode -

    • parseField

      protected abstract void parseField(String tag, String value)
      Parse a field for this record
      Parameters:
      tag -
      value -