Uses of Interface org.snpeff.snpEffect.VcfAnnotator (SnpEff 5.2 API)

Packages that use VcfAnnotator

Package

Description

org.snpeff.snpEffect

org.snpeff.snpEffect.commandLine

Uses of VcfAnnotator in org.snpeff.snpEffect

Classes in org.snpeff.snpEffect that implement VcfAnnotator

Modifier and Type

Class

Description

class

VcfAnnotatorChain

Maintains a list of VcfAnnotators and applies them one by one in the specified order

Methods in org.snpeff.snpEffect with parameters of type VcfAnnotator

Modifier and Type

Method

Description

void

VcfAnnotatorChain.add(VcfAnnotator vcfAnnotator)

Add a new annotator
Uses of VcfAnnotator in org.snpeff.snpEffect.commandLine

Classes in org.snpeff.snpEffect.commandLine that implement VcfAnnotator

Modifier and Type

Class

Description

class

SnpEffCmdEff

Command line program: Predict variant effects