Uses of Class
org.snpeff.svg.Svg

Packages that use Svg
Package
Description
org.snpeff.svg
 

  • Uses of Svg in org.snpeff.svg

    Subclasses of Svg in org.snpeff.svg
    Modifier and Type
    Class
    Description
    class 
    SvgBnd
    Create an SVG representation of a BND (translocation) variant In a VCF file, there are four possible translocations (BND) entries: REF ALT Meaning type 1: s t[p[ piece extending to the right of p is joined after t type 2: s t]p] reverse comp piece extending left of p is joined after t type 3: s ]p]t piece extending to the left of p is joined before t type 4: s [p[t reverse comp piece extending right of p is joined before t
    class 
    SvgCds
    Create an SVG representation of a Marker
    class 
    SvgExon
    Create an SVG representation of a Marker
    class 
    SvgGene
    Create an SVG representation of a Marker
    class 
    SvgIntron
    Create an SVG representation of a Marker
    class 
    SvgNextProt
    Create an SVG representation of a NextProt annotation tracks
    class 
    SvgScale
    Create an SVG representation of a "Scale and Chromsome labels
    class 
    SvgSpacer
    Leave an empty vertical space
    class 
    SvgTranscript
    Create an SVG representation of a transcript
    class 
    SvgTranslocation
    Create an SVG representation of a BND (translocation) variant In a VCF file, there are four possible translocations (BND) entries: REF ALT Meaning type 1: s t[p[ piece extending to the right of p is joined after t type 2: s t]p] reverse comp piece extending left of p is joined after t type 3: s ]p]t piece extending to the left of p is joined before t type 4: s [p[t reverse comp piece extending right of p is joined before t
    Methods in org.snpeff.svg that return Svg
    Modifier and Type
    Method
    Description
    static Svg
    Svg.factory(Marker m, Svg svg)
     
    Methods in org.snpeff.svg with parameters of type Svg
    Modifier and Type
    Method
    Description
    static Svg
    Svg.factory(Marker m, Svg svg)
     
    Constructors in org.snpeff.svg with parameters of type Svg
    Modifier
    Constructor
    Description
     
    Svg(Marker m, Svg svg)
     
     
    SvgBnd(VariantBnd varBnd, Svg svgTr1, Svg svgTr2)
     
     
    SvgCds(Cds cds, Svg svg)
     
     
    SvgExon(Exon ex, Svg svg)
     
     
    SvgGene(Gene gene, Svg svg)
     
     
    SvgIntron(Intron intron, Svg svg)
     
     
    SvgNextProt(Transcript tr, Svg svg, Markers nextprotMarkers)
     
     
    SvgScale(Marker m, Svg svg)
     
     
    SvgSpacer(Marker m, Svg svg)
     
     
    SvgTranscript(Transcript tr, Svg svg)