Uses of Class org.snpeff.vcf.VcfEffect (SnpEff 5.2 API)

Packages that use VcfEffect

Package

Description

org.snpeff.stats

Uses of VcfEffect in org.snpeff.stats

Constructors in org.snpeff.stats with parameters of type VcfEffect

Modifier

Constructor

Description

TranslocationReport(VariantBnd var, VcfEffect veff, Transcript tr1, Transcript tr2)
Uses of VcfEffect in org.snpeff.vcf

Fields in org.snpeff.vcf with type parameters of type VcfEffect

Modifier and Type

Field

Description

protected List<VcfEffect>

VcfEntry.vcfEffects

Methods in org.snpeff.vcf that return types with arguments of type VcfEffect

Modifier and Type

Method

Description

List<VcfEffect>

VcfEntry.getVcfEffects()

List<VcfEffect>

VcfEntry.getVcfEffects(EffFormatVersion formatVersion)

Parse 'EFF' info field and get a list of effects